Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5027

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13394 and 13395 are separated by 544 nucleotides mRNA_5026: 13394 - K01698 hemB, ALAD porphobilinogen synthase, at 1,583,295 to 1,584,679 13394 mRNA_5027: 13395 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,585,224 to 1,587,309 13395

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,584,786 - +0.1
1,584,789 + -0.2
1,584,792 - -0.4
1,584,804 + -0.1
1,584,828 + +0.1
1,584,854 + -0.6
1,584,856 + -0.9
1,584,862 - -0.1
1,584,879 - +1.1
1,584,880 - +0.9
1,584,884 - -0.8
1,584,887 + +0.1
1,584,887 - +0.3
1,584,887 - -0.7
1,584,889 + -1.1
1,584,894 + -0.4
1,584,897 + -0.6
1,584,897 + +1.0
1,584,916 + +0.3
1,584,923 - -0.5
1,584,994 - -0.4
1,584,997 + -1.1
1,585,018 - +0.1
1,585,032 + +0.2
1,585,033 + +0.5
1,585,034 - -1.1
1,585,037 + -0.4
1,585,038 + +0.2
1,585,038 - +1.1
1,585,050 - -0.5
1,585,051 + -0.1
1,585,054 - -0.7
1,585,064 - +0.2
1,585,067 - +0.5
1,585,068 - -1.4
1,585,079 + +0.7
1,585,081 - -0.0
1,585,094 - +0.3
1,585,096 + -0.0
1,585,102 + -0.3
1,585,116 + -0.7
1,585,134 - -0.7
1,585,227 - -0.6
1,585,239 + -1.0
1,585,256 - -0.3
1,585,256 - -0.3
1,585,568 - 13395 mRNA_5027 0.16 -2.3
1,585,582 + 13395 mRNA_5027 0.17 +0.2
1,585,590 - 13395 mRNA_5027 0.18 -1.4
1,585,606 - 13395 mRNA_5027 0.18 +0.0
1,586,025 + 13395 mRNA_5027 0.38 -1.2
1,586,338 - 13395 mRNA_5027 0.53 -1.9
1,586,878 - 13395 mRNA_5027 0.79 -0.3
1,587,192 - -1.5
1,587,453 - +0.3
1,587,486 - +0.1
1,587,487 + +0.1
1,587,601 - +0.5
1,587,648 + -0.6
1,587,754 - -0.8
1,587,779 + -0.0
1,587,901 - +0.7
1,587,915 + +0.2
1,587,923 - +0.2
1,587,940 + -1.6
1,588,061 + +0.1
1,588,092 - +0.9
1,588,209 + -0.2
1,588,210 + -1.8
1,588,225 + +0.1
1,588,225 + -0.6

Or see this region's nucleotide sequence