Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5094

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13461 and 13462 are separated by 474 nucleotides13462 and 13463 are separated by 136 nucleotides mRNA_5093: 13461 - Hypothetical Protein, at 1,732,300 to 1,732,990 13461 mRNA_5094: 13462 - K10259 MET30 F-box and WD-40 domain protein MET30, at 1,733,465 to 1,736,154 13462 mRNA_5095: 13463 - K03106 SRP54, ffh signal recognition particle subunit SRP54, at 1,736,291 to 1,738,860 13463

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,732,580 + 13461 mRNA_5093 0.41 +0.6
1,732,729 + 13461 mRNA_5093 0.62 -0.0
1,732,894 + 13461 mRNA_5093 0.86 -0.6
1,732,998 + -0.4
1,733,111 - +0.5
1,733,132 - +0.3
1,733,150 - +1.0
1,733,155 + +0.0
1,733,162 - -1.1
1,733,167 + +0.3
1,733,274 - -0.0
1,733,275 - +0.2
1,733,276 + -0.0
1,733,282 - -0.4
1,733,301 - -0.4
1,733,323 + +0.3
1,733,425 - +0.5
1,733,428 - +0.5
1,733,438 + +0.2
1,733,440 + -0.6
1,733,453 + +1.0
1,733,453 + -0.3

Or see this region's nucleotide sequence