Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5143

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13511 and 13512 are separated by 854 nucleotides mRNA_5143: 13511 - K12763 SOK2 protein SOK2, at 4,212 to 7,292 13511 mRNA_5144: 13512 - BLAST putative mit domain-containing protein [Erysiphe neca..., at 8,147 to 8,373 13512

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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3,478 + +0.1
3,502 + -2.0
3,509 + -0.5
3,622 + +0.4
3,622 + +0.3
3,628 + -0.2
3,641 + -0.7
3,726 - +0.9
3,741 + -0.5
3,765 + +0.1
3,803 + -1.0
4,034 + -1.1
4,475 - +0.8
4,479 - +1.3
4,526 + 13511 mRNA_5143 0.10 -0.0
4,663 - 13511 mRNA_5143 0.15 -0.9
4,792 + 13511 mRNA_5143 0.19 +1.1
4,817 + 13511 mRNA_5143 0.20 -1.3
4,909 + 13511 mRNA_5143 0.23 +0.7
4,931 + 13511 mRNA_5143 0.23 +0.1
4,947 - 13511 mRNA_5143 0.24 +0.4
4,976 + 13511 mRNA_5143 0.25 -0.5
5,012 + 13511 mRNA_5143 0.26 -0.1
5,088 + 13511 mRNA_5143 0.28 -0.2
5,089 - 13511 mRNA_5143 0.28 -0.3
5,095 + 13511 mRNA_5143 0.29 -1.5
5,266 + 13511 mRNA_5143 0.34 -0.3
5,319 + 13511 mRNA_5143 0.36 -0.4
5,364 + 13511 mRNA_5143 0.37 +0.2
5,412 - 13511 mRNA_5143 0.39 -1.0
5,495 + 13511 mRNA_5143 0.42 -0.5
5,674 - 13511 mRNA_5143 0.47 -1.2
5,676 + 13511 mRNA_5143 0.48 -1.1
5,836 + 13511 mRNA_5143 0.53 -0.7
5,960 + 13511 mRNA_5143 0.57 +0.5
6,090 - 13511 mRNA_5143 0.61 +0.6
6,153 + 13511 mRNA_5143 0.63 -0.3
6,260 + 13511 mRNA_5143 0.66 +0.2
6,459 + 13511 mRNA_5143 0.73 -0.6
6,533 + 13511 mRNA_5143 0.75 +0.2
6,561 + 13511 mRNA_5143 0.76 +0.6
6,589 + 13511 mRNA_5143 0.77 +0.0
6,833 - 13511 mRNA_5143 0.85 +0.2
6,846 + 13511 mRNA_5143 0.85 +0.6
7,001 + +0.4
7,143 + +0.3
7,151 - +0.2
7,151 - -0.2
7,151 - +0.1
7,152 + +0.3
7,157 + +0.8
7,157 + -1.2
7,157 + -0.8
7,404 - -0.5
7,405 - -0.9
7,410 + +0.2
7,547 - -0.1
7,889 - +0.5
8,019 - -0.8
8,069 + +1.0
8,108 + +0.1
8,267 - 13512 mRNA_5144 0.53 +1.7

Or see this region's nucleotide sequence