Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5221

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13589 and 13590 are separated by 265 nucleotides mRNA_5221: 13589 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 184,059 to 187,472 13589 mRNA_5222: 13590 - Hypothetical Protein, at 187,738 to 188,641 13590

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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183,061 + +0.6
183,064 - -1.0
183,069 + +0.5
183,070 + +0.7
183,080 + +0.7
183,093 + +0.4
183,142 + -0.2
183,163 + -0.8
183,198 - -0.1
183,218 + +0.2
183,280 - -1.0
183,316 + +0.1
183,336 - -1.4
183,345 - +1.8
183,454 - +0.2
183,477 - +0.0
183,543 + +0.2
183,786 + -0.7
183,909 + -0.4
183,914 - +0.7
183,916 - +0.1
183,924 - -0.7
183,925 + -0.2
183,939 + -0.2
183,943 + -0.3
184,069 - +0.9
184,086 + -0.8
184,313 + +1.2
184,473 - 13589 mRNA_5221 0.12 -2.9
184,482 + 13589 mRNA_5221 0.12 +0.6
184,519 - 13589 mRNA_5221 0.13 +0.1
184,522 - 13589 mRNA_5221 0.14 -1.4
184,524 - 13589 mRNA_5221 0.14 -0.6
184,528 + 13589 mRNA_5221 0.14 +0.8
184,933 + 13589 mRNA_5221 0.26 +0.9
185,082 + 13589 mRNA_5221 0.30 -2.1
185,362 + 13589 mRNA_5221 0.38 -1.0
185,385 - 13589 mRNA_5221 0.39 +0.3
185,656 + 13589 mRNA_5221 0.47 +3.0
185,688 - 13589 mRNA_5221 0.48 -0.3
185,692 + 13589 mRNA_5221 0.48 -0.3
185,716 + 13589 mRNA_5221 0.49 -0.8
185,807 + 13589 mRNA_5221 0.51 -0.5
185,832 - 13589 mRNA_5221 0.52 -0.3
185,853 - 13589 mRNA_5221 0.53 +0.2
185,934 + 13589 mRNA_5221 0.55 -0.1
186,000 - 13589 mRNA_5221 0.57 -1.5
186,102 - 13589 mRNA_5221 0.60 -0.6
186,270 - 13589 mRNA_5221 0.65 +0.6
186,400 + 13589 mRNA_5221 0.69 +2.1
186,403 - 13589 mRNA_5221 0.69 -0.4
186,523 + 13589 mRNA_5221 0.72 +0.2
186,525 - 13589 mRNA_5221 0.72 -0.5
186,586 - 13589 mRNA_5221 0.74 -0.6
186,717 - 13589 mRNA_5221 0.78 -1.3
187,013 + 13589 mRNA_5221 0.87 +0.2
187,395 - +0.3
187,538 + -2.4
187,561 + +1.1
187,569 + +0.3
187,712 + -0.1
187,739 + +0.9
187,822 + -0.6
188,021 - 13590 mRNA_5222 0.31 +1.5
188,189 + 13590 mRNA_5222 0.50 +2.0
188,435 + 13590 mRNA_5222 0.77 -0.3

Or see this region's nucleotide sequence