Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5249

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13616 and 13617 are separated by 449 nucleotides mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628 13617

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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259,722 + 13616 mRNA_5248 0.64 -0.5
259,896 - 13616 mRNA_5248 0.77 +0.1
259,934 - 13616 mRNA_5248 0.80 -0.7
259,945 - 13616 mRNA_5248 0.81 +0.5
259,983 + 13616 mRNA_5248 0.84 -1.6
260,019 - 13616 mRNA_5248 0.86 -0.8
260,080 + -1.1
260,084 + +0.7
260,088 + -0.5
260,239 - -0.1
260,348 - -0.1
260,364 - +0.4
260,390 + +0.9
260,516 + +0.8
260,553 + +0.4
264,249 - +0.5
264,671 - -0.3
264,673 - +0.7
264,675 + +0.2
264,677 - -0.2
264,680 + +0.2
264,684 - +0.4
264,685 + -0.2
264,685 - -0.1
264,686 + +1.0
264,687 - +0.4
264,691 - -0.7
264,695 - -0.0
264,698 - -0.3
264,701 - +0.1
264,705 + +1.4
264,706 - -0.2
264,709 + +0.1
264,712 - -0.6
264,713 - -0.2
264,714 + +0.3
264,716 - +0.3
264,726 + +0.4
264,728 - +0.6
264,732 - -0.5
264,738 + +1.0
264,740 - +1.9
264,740 + -0.0
264,753 + +0.5
264,757 - +1.0
264,773 + -0.3
264,773 - +0.5
264,784 + +0.2
264,796 + +0.6
264,806 - +0.5
264,836 - -0.3
264,846 - +0.6
264,847 - +0.2
264,849 - -0.1
264,853 + -0.3
264,854 - -1.4
264,857 - +1.1
264,858 - -0.4
264,858 + +0.8
264,859 - +0.9
264,869 - -0.3
264,870 - +0.6
264,870 - -0.8
264,871 - -0.3
264,872 + -0.1
264,874 - +0.3
264,874 - +0.0
264,875 - -0.1
264,878 - +0.4
264,879 + -0.9
264,881 + -0.3
264,881 + -1.3
264,888 - -1.9
264,889 - -0.4
264,890 - +0.6
264,891 + +0.2
264,892 + +0.7
264,893 - +0.6
264,893 - +0.3
264,894 + -0.6
264,894 + -0.6
264,895 - +0.0
264,900 + +0.3
264,902 - -0.1
264,902 + +0.5
264,906 + +1.1
264,907 - +0.0
264,909 + +0.1
264,911 - -0.7
264,929 + -0.5
264,948 - +0.1
264,948 - +0.2
264,948 - -0.2
264,948 - -0.0
264,952 + +2.2
264,956 - -0.6
264,957 + -0.1
264,971 - -0.9
264,971 - -1.4
264,971 - -0.1
264,971 - -0.4
264,972 + +0.4
264,974 + +1.8
264,976 - -0.1
264,979 + -0.4
264,979 + +0.0
264,981 - +0.2
264,982 + -0.7
264,983 - -0.5
264,983 + -1.0
264,986 + -0.2
264,986 + -0.3
264,986 + -1.5
264,988 - +0.8
264,993 - -0.3
265,030 + +0.4
265,041 - -1.0
265,118 + -0.8
265,125 + +0.4
265,139 + -1.9
265,146 + -0.3
265,150 + -0.3
265,157 - +1.1
265,160 - -0.7
265,165 + +0.1
265,172 + +0.4
265,174 - +0.1
265,175 - +1.0
265,176 + -0.6
265,176 - +0.1
265,189 - -0.7
265,203 + +0.4
265,218 - -0.6
265,228 - +0.2
265,233 + -0.3
265,236 + +0.1
265,272 - -0.4
265,319 - +0.9
265,322 + -0.7
265,329 - -0.3
265,340 + -0.2
265,351 + -0.4
265,363 + -0.6
265,433 - -0.2
265,441 + -0.1
265,453 - -0.0
265,457 - +0.2
265,459 + -0.2
265,461 - +0.4
265,462 - -0.3
265,464 - +0.0
265,465 - -0.6
265,469 + +0.1
265,471 + -0.2
265,472 - +0.6
265,478 - -0.1
265,481 + +0.3
265,484 + -0.3
265,485 + +0.5
265,486 + -0.0
265,488 + -1.0
265,498 - +0.0
265,503 - +0.4
265,509 + +0.0
265,510 - +0.5
265,510 - -0.2
265,520 + +0.1
265,521 + -0.9
265,525 + +0.0
265,530 - +0.2
265,531 - +0.3
265,532 - +0.4
265,534 + -1.3
265,535 - +0.5
265,536 + -0.4
265,542 + +0.1
265,548 + -0.3
265,548 - +0.1
265,592 - -0.0
265,597 - +0.7
265,603 + -0.6
265,604 - +0.2
265,606 + -0.1
265,608 - -0.3
265,622 + +0.1

Or see this region's nucleotide sequence