Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5260

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13627 and 13628 are separated by 756 nucleotides13628 and 13629 are separated by 580 nucleotides mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995 13627 mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302,752 to 303,807 13628 mRNA_5261: 13629 - K01173 ENDOG endonuclease G, mitochondrial, at 304,388 to 306,039 13629

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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302,085 - -0.1
302,105 + -0.4
302,126 + +0.2
302,231 - +0.0
302,371 + -0.2
302,378 - +0.2
302,378 + +0.6
302,387 - +0.8
302,389 - +1.6
302,391 + +0.9
302,395 - +0.1
302,399 - -1.9
302,404 - +0.4
302,512 - -0.2
302,549 + +0.7
302,677 + -0.1
302,677 + -1.8
302,680 - +0.6
302,687 - +0.4
302,691 - -0.1
302,694 + -1.7
302,706 + -0.7
304,041 - -2.1
304,321 + -0.1
304,341 + -0.1
304,463 - -1.8
304,483 + -0.7

Or see this region's nucleotide sequence