Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5319

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13686 and 13687 are separated by 712 nucleotides13687 and 13688 are separated by 345 nucleotides mRNA_5318: 13686 - KOG4315 G-patch nucleic acid binding protein, at 444,861 to 446,150 13686 mRNA_5319: 13687 - HMMPfam-Plasma-membrane choline transporter-PF04515, at 446,863 to 449,105 13687 mRNA_5320: 13688 - K03038 PSMD7, RPN8 26S proteasome regulatory subunit N8, at 449,451 to 450,740 13688

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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446,205 - -0.6
446,212 + -0.7
446,322 + -0.5
446,542 - -0.7
446,667 - -0.7
446,709 + -0.6
446,825 - -0.6
446,981 - -1.3
447,130 - 13687 mRNA_5319 0.12 -0.7
447,396 - 13687 mRNA_5319 0.24 -0.6
447,986 - 13687 mRNA_5319 0.50 +1.0
447,993 + 13687 mRNA_5319 0.50 +0.1
448,144 + 13687 mRNA_5319 0.57 +0.3
448,359 + 13687 mRNA_5319 0.67 -0.9
448,550 + 13687 mRNA_5319 0.75 -0.2
448,630 + 13687 mRNA_5319 0.79 -0.5
448,736 + 13687 mRNA_5319 0.84 -0.7
448,855 + 13687 mRNA_5319 0.89 +0.4
448,882 + -0.3
448,891 - +0.2
448,912 + +0.4
449,162 - -0.5
449,172 - +1.3
449,176 - +0.7
449,177 + +0.1
449,177 - +0.7
449,198 + +1.1

Or see this region's nucleotide sequence