Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5334

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13701 and 13702 are separated by 246 nucleotides13702 and 13703 are separated by 299 nucleotides mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478,191 to 479,250 13701 mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330 13702 mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657 13703

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
478,546 - 13701 mRNA_5333 0.33 -0.5
478,557 - 13701 mRNA_5333 0.35 -0.8
478,564 + 13701 mRNA_5333 0.35 -0.6
478,870 - 13701 mRNA_5333 0.64 -0.1
478,897 - 13701 mRNA_5333 0.67 -0.4
478,904 + 13701 mRNA_5333 0.67 -0.2
478,979 - 13701 mRNA_5333 0.74 -1.5
479,041 - 13701 mRNA_5333 0.80 +1.0
479,981 + 13702 mRNA_5334 0.26 -1.3
481,414 + +0.2
481,462 + -1.0
481,532 - -2.9
481,540 + +0.2
481,564 + +0.9
481,703 + +0.7
481,703 + -0.6
481,742 - 13703 mRNA_5335 0.11 -0.3
481,955 + 13703 mRNA_5335 0.32 +0.5
482,031 - 13703 mRNA_5335 0.39 -0.3

Or see this region's nucleotide sequence