Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5337

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13704 and 13705 are separated by 215 nucleotides13705 and 13706 are separated by 483 nucleotides mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482,937 to 484,688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484,904 to 487,998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488,482 to 491,424 13706

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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484,905 - +0.5
485,157 - +0.5
485,197 + -0.5
485,329 + 13705 mRNA_5337 0.14 -0.4
485,347 + 13705 mRNA_5337 0.14 -0.3
485,389 - 13705 mRNA_5337 0.16 -0.4
485,565 - 13705 mRNA_5337 0.21 -1.0
485,646 + 13705 mRNA_5337 0.24 -0.9
485,795 - 13705 mRNA_5337 0.29 +0.6
485,822 - 13705 mRNA_5337 0.30 +0.0
486,242 - 13705 mRNA_5337 0.43 -0.3
486,316 + 13705 mRNA_5337 0.46 -0.1
486,376 - 13705 mRNA_5337 0.48 +0.3
486,554 + 13705 mRNA_5337 0.53 +0.2
486,554 + 13705 mRNA_5337 0.53 -0.3
486,616 - 13705 mRNA_5337 0.55 -0.4
486,814 + 13705 mRNA_5337 0.62 +0.8
487,071 - 13705 mRNA_5337 0.70 +0.1
487,231 + 13705 mRNA_5337 0.75 -0.0
487,249 + 13705 mRNA_5337 0.76 -0.7
487,523 - 13705 mRNA_5337 0.85 -1.3
488,100 - -0.3
488,146 + +0.5
488,373 - -0.7
488,393 + -0.4
488,408 + -0.9
488,410 - -0.5
488,520 - +1.2
488,545 - +0.4
488,803 + 13706 mRNA_5338 0.11 -1.2
488,810 - 13706 mRNA_5338 0.11 +0.8
488,810 - 13706 mRNA_5338 0.11 -1.2
488,822 - 13706 mRNA_5338 0.12 -0.9
488,956 - 13706 mRNA_5338 0.16 -0.3
488,991 - 13706 mRNA_5338 0.17 -1.3
488,996 + 13706 mRNA_5338 0.17 -1.9

Or see this region's nucleotide sequence