Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5388

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13756 and 13757 are separated by 150 nucleotides mRNA_5388: 13756 - K02931 RP-L5, MRPL5, rplE large subunit ribosomal protein L5, at 628,120 to 629,112 13756 mRNA_5389: 13757 - KOG0750 Mitochondrial solute carrier protein, at 629,263 to 631,005 13757

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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627,147 - -1.3
627,229 - -1.0
627,235 + -0.2
627,249 + -0.9
627,256 + -0.5
627,325 - -0.8
627,560 + -1.1
627,623 - -0.2
627,643 + -0.5
627,663 + -0.0
627,671 - +0.5
627,776 + -0.6
627,852 + +0.3
627,964 - -0.4
627,980 - -1.8
628,028 - -0.8
629,132 - -0.5
629,133 - -0.4
629,140 - -0.5
629,167 + -0.3
629,168 + -0.7
629,181 + -0.9
629,181 + +0.1
629,270 - +0.8
629,291 - -1.5
629,294 - -1.1
629,294 - -0.4
629,305 + -0.4
629,308 - -0.5
629,311 + -0.9
629,319 - +0.2
629,320 + -1.1
629,322 + -1.0
629,322 - -0.1
629,336 + -1.1
629,341 - -1.7
629,362 + -0.5
629,367 - +0.7
629,460 - 13757 mRNA_5389 0.11 -0.7
629,515 + 13757 mRNA_5389 0.14 -1.0
629,607 - 13757 mRNA_5389 0.20 -2.5
629,621 - 13757 mRNA_5389 0.21 -1.9
629,628 - 13757 mRNA_5389 0.21 -0.8
629,758 - 13757 mRNA_5389 0.28 -0.1
629,762 + 13757 mRNA_5389 0.29 -0.6
629,900 - 13757 mRNA_5389 0.37 -0.5
629,918 + 13757 mRNA_5389 0.38 -1.5
630,046 - 13757 mRNA_5389 0.45 -0.1

Or see this region's nucleotide sequence