Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1 + -0.2
1 + +0.3
1 + +0.9
1 + -0.2
23 + -1.5
29 + +0.7
29 + +0.0
34 + +1.6
39 + +0.4
39 + -0.5
47 + +0.6
50 + +0.6
50 + +1.2
50 + -3.0
50 + +1.6
50 - +0.6
51 + +0.5
61 + +0.6
62 + -0.3
96 + -0.5
116 + -0.2
158 - -1.5
159 - +0.7
160 - -0.9
169 - +0.7
180 - -0.2
189 + +0.1
198 + +1.3
201 - +2.2
208 - +0.4
210 + -1.3
225 + 13762 mRNA_5394 0.11 -1.0
225 + 13762 mRNA_5394 0.11 -0.3
244 + 13762 mRNA_5394 0.13 -2.1
245 - 13762 mRNA_5394 0.13 +1.5
271 - 13762 mRNA_5394 0.16 +0.4
276 - 13762 mRNA_5394 0.16 -0.3
277 + 13762 mRNA_5394 0.16 +0.1
280 - 13762 mRNA_5394 0.17 -0.4
306 + 13762 mRNA_5394 0.19 -0.6
317 - 13762 mRNA_5394 0.21 -0.3
345 + 13762 mRNA_5394 0.23 -0.5
345 - 13762 mRNA_5394 0.23 -1.5
347 + 13762 mRNA_5394 0.24 -0.8
359 - 13762 mRNA_5394 0.25 -0.1
387 - 13762 mRNA_5394 0.28 -0.9
399 + 13762 mRNA_5394 0.29 +0.1
434 + 13762 mRNA_5394 0.33 -0.3
447 - 13762 mRNA_5394 0.34 +0.6
485 - 13762 mRNA_5394 0.38 +1.4
543 + 13762 mRNA_5394 0.44 -0.9
649 + 13762 mRNA_5394 0.55 +0.8
667 + 13762 mRNA_5394 0.57 +1.1
667 - 13762 mRNA_5394 0.57 -0.6
678 - 13762 mRNA_5394 0.58 -0.6
718 + 13762 mRNA_5394 0.63 -0.2
723 + 13762 mRNA_5394 0.63 +1.1
802 + 13762 mRNA_5394 0.71 +0.5
806 + 13762 mRNA_5394 0.72 -2.0
905 - 13762 mRNA_5394 0.82 -0.0
911 + 13762 mRNA_5394 0.83 +0.3
965 + 13762 mRNA_5394 0.88 -2.5
966 + 13762 mRNA_5394 0.89 -0.6
968 + 13762 mRNA_5394 0.89 +2.1
1,014 - +0.3
1,084 - -0.5
1,103 - +0.4
1,110 + +0.2
1,245 - 13763 mRNA_5395 0.11 -0.2
1,260 - 13763 mRNA_5395 0.13 +0.5
1,376 - 13763 mRNA_5395 0.27 +0.2
1,438 + 13763 mRNA_5395 0.34 -0.4
1,438 + 13763 mRNA_5395 0.34 -0.9
1,438 + 13763 mRNA_5395 0.34 +1.2
1,523 + 13763 mRNA_5395 0.44 -0.5
1,528 - 13763 mRNA_5395 0.45 -0.0
1,533 + 13763 mRNA_5395 0.45 +0.6
1,538 + 13763 mRNA_5395 0.46 +0.2
1,538 - 13763 mRNA_5395 0.46 -0.2
1,556 + 13763 mRNA_5395 0.48 +0.2
1,639 + 13763 mRNA_5395 0.58 +0.3
1,854 - 13763 mRNA_5395 0.83 +0.5
1,855 - 13763 mRNA_5395 0.83 +0.2
1,887 - 13763 mRNA_5395 0.87 -0.5
1,908 - 13763 mRNA_5395 0.89 -0.2
2,000 - +0.5
2,009 + +0.6

Or see this region's nucleotide sequence