Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5409

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13777 and 13778 are separated by 993 nucleotides mRNA_5409: 13777 - Hypothetical Protein, at 32,747 to 36,067 13777 mRNA_5410: 13778 - KOG2952 Cell cycle control protein, at 37,061 to 38,634 13778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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31,749 + -0.1
31,751 - -0.5
31,845 + +0.7
31,873 - +0.3
31,884 + -2.9
31,945 - +1.0
32,038 + +0.8
32,043 + +0.2
32,224 + -1.3
32,334 + +1.0
32,346 - -0.0
32,369 + -0.8
32,369 + +1.5
32,499 - +1.9
32,612 - -0.1
32,618 + +0.7
32,633 + +0.4
32,759 - -1.0
32,766 + -0.0
32,768 + -0.7
32,883 + +0.2
32,926 + +0.6
33,060 - -0.4
33,073 - +0.4
33,382 + 13777 mRNA_5409 0.19 +1.4
33,769 + 13777 mRNA_5409 0.31 +0.2
33,916 - 13777 mRNA_5409 0.35 +0.3
33,929 - 13777 mRNA_5409 0.36 +0.4
33,951 - 13777 mRNA_5409 0.36 -0.4
33,954 - 13777 mRNA_5409 0.36 -1.2
34,061 - 13777 mRNA_5409 0.40 +0.1
34,202 - 13777 mRNA_5409 0.44 +0.0
34,202 - 13777 mRNA_5409 0.44 +1.3
34,247 + 13777 mRNA_5409 0.45 -1.3
34,459 - 13777 mRNA_5409 0.52 -0.6
34,472 - 13777 mRNA_5409 0.52 -0.8
34,935 + 13777 mRNA_5409 0.66 -1.2
35,096 - 13777 mRNA_5409 0.71 +0.4
35,256 + 13777 mRNA_5409 0.76 -1.7
35,710 - 13777 mRNA_5409 0.89 +0.6
35,712 + 13777 mRNA_5409 0.89 +0.6
35,805 + +0.4
35,819 - +0.0
35,967 - -0.4
35,967 - +0.7
35,973 - -0.3
35,973 - +0.3
35,979 - +0.3
35,986 + +0.2
35,989 + -1.0
36,104 - +1.0
36,105 + +0.4
36,114 + +0.5
36,116 - -1.4
36,123 + -0.4
36,123 - -0.2
36,127 - -0.2
36,134 + +0.1
36,139 - -1.9
36,146 + +0.1
36,253 - -0.6
36,270 + -0.2
36,410 - -0.1
36,415 + +0.4
36,461 - +0.2
36,529 - +0.2
36,550 - -0.6
36,742 - -1.4
36,863 - +0.4
36,890 + -2.5
37,014 - +0.3
37,018 + +1.0
37,025 - -0.4
37,028 + +1.1
37,028 - +0.7
37,029 + +1.5
37,043 + +0.8

Or see this region's nucleotide sequence