Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5486

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13853 and 13854 are separated by 388 nucleotides13854 and 13855 are separated by 537 nucleotides mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209,798 to 210,668 13853 mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211,057 to 213,286 13854 mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622 13855

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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210,672 - +0.7
210,678 + -0.3
210,686 - -0.4
210,726 + +0.4
211,397 + 13854 mRNA_5486 0.15 -1.7
211,996 - 13854 mRNA_5486 0.42 -0.3
211,999 - 13854 mRNA_5486 0.42 -0.9
212,009 + 13854 mRNA_5486 0.43 +0.4
212,251 - 13854 mRNA_5486 0.54 +0.1
212,622 + 13854 mRNA_5486 0.70 -0.4
212,626 + 13854 mRNA_5486 0.70 -0.2
212,710 - 13854 mRNA_5486 0.74 +0.2
212,781 - 13854 mRNA_5486 0.77 +0.4
212,811 - 13854 mRNA_5486 0.79 -0.4
212,811 - 13854 mRNA_5486 0.79 +0.2
213,057 + 13854 mRNA_5486 0.90 -0.6
213,510 - -1.5
213,641 + +2.4
213,658 - -0.3
214,062 - 13855 mRNA_5487 0.30 +0.4
214,102 + 13855 mRNA_5487 0.35 -1.4
214,135 + 13855 mRNA_5487 0.39 -0.2
214,201 + 13855 mRNA_5487 0.47 -1.3

Or see this region's nucleotide sequence