Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5506

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13874 and 13875 are separated by 98 nucleotides mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586 13874 mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151 13875

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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256,360 + -0.4
256,530 + +0.6
256,793 + +0.7
256,951 - +0.7
257,091 + +0.2
257,384 - -0.6
257,404 + +0.5
257,486 - -0.6
257,539 - -0.2
257,558 - 13874 mRNA_5506 0.11 -0.4
257,656 + 13874 mRNA_5506 0.15 -0.4
257,700 - 13874 mRNA_5506 0.17 +0.5
258,139 - 13874 mRNA_5506 0.36 -0.5
258,280 + 13874 mRNA_5506 0.42 +0.4
258,553 - 13874 mRNA_5506 0.54 -1.9
258,821 + 13874 mRNA_5506 0.66 +0.3
259,182 - 13874 mRNA_5506 0.82 +0.9
259,451 + -0.2
259,895 - 13875 mRNA_5507 0.14 -0.6
260,510 + 13875 mRNA_5507 0.56 -0.6

Or see this region's nucleotide sequence