Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5515

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13882 and 13883 are separated by 377 nucleotides13883 and 13884 are separated by 155 nucleotides mRNA_5514: 13882 - K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12, at 273,277 to 274,802 13882 mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108 13883 mRNA_5516: 13884 - Hypothetical Protein, at 276,264 to 277,474 13884

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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274,890 + +2.4
275,002 + +0.6
275,009 - +0.3
275,015 - -0.1
276,177 - -1.1
276,177 - -0.5
276,199 + +0.5
276,230 - +0.7
276,331 + -1.4
276,361 - -1.0
276,382 - -0.6
276,639 + 13884 mRNA_5516 0.31 -0.0
276,906 - 13884 mRNA_5516 0.53 +0.5
276,912 - 13884 mRNA_5516 0.54 +0.3
276,920 + 13884 mRNA_5516 0.54 -0.5

Or see this region's nucleotide sequence