Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5518

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13886 and 13887 are separated by 666 nucleotides mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287,492 to 288,002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288,669 to 289,832 13887

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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286,709 - -0.9
287,231 - +0.6
287,268 - +1.3
287,510 + +0.4
287,513 - +0.2
287,595 + 13886 mRNA_5518 0.20 +0.7
287,639 + 13886 mRNA_5518 0.29 -0.1
287,653 + 13886 mRNA_5518 0.32 +0.5
288,039 + -0.9
288,175 - -0.1
288,198 - -0.4
288,211 + +0.2
288,263 + -1.2
288,402 - -0.1
288,497 + +0.3
288,636 - +0.6
288,900 - 13887 mRNA_5519 0.20 -0.3
288,902 - 13887 mRNA_5519 0.20 +0.0
288,936 - 13887 mRNA_5519 0.23 -0.2

Or see this region's nucleotide sequence