Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5533

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13900 and 13901 are separated by 172 nucleotides13901 and 13902 are separated by 197 nucleotides mRNA_5532: 13900 - K01519 ITPA inosine triphosphate pyrophosphatase, at 312,608 to 313,852 13900 mRNA_5533: 13901 - Hypothetical Protein, at 314,025 to 315,738 13901 mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315,936 to 317,983 13902

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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313,061 + 13900 mRNA_5532 0.36 +0.6
313,348 + 13900 mRNA_5532 0.59 -0.7
313,645 + 13900 mRNA_5532 0.83 -0.3
313,756 + +0.0
313,987 + +0.1
314,515 + 13901 mRNA_5533 0.29 -1.1
314,781 + 13901 mRNA_5533 0.44 -0.5
314,795 + 13901 mRNA_5533 0.45 -0.4
315,832 + -0.3
315,836 + -1.2
315,843 + -0.2
315,973 - -0.1
316,083 - -1.4
316,107 + -0.8
316,119 - -0.8
316,121 + -0.9
316,550 + 13902 mRNA_5534 0.30 -1.5

Or see this region's nucleotide sequence