Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5584

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13951 and 13952 are separated by 117 nucleotides13952 and 13953 are separated by 769 nucleotides mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660 13951 mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952 mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812 13953

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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436,508 - 13952 mRNA_5584 0.51 +0.6
438,235 + -1.5
438,536 - -0.1
438,537 + -0.6
438,687 + -2.1
438,734 + -0.1
438,852 + -0.1

Or see this region's nucleotide sequence