Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5585

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13952 and 13953 are separated by 769 nucleotides mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952 mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812 13953

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
438,235 + -1.5
438,536 - -0.1
438,537 + -0.6
438,687 + -2.1
438,734 + -0.1
438,852 + -0.1
439,578 - 13953 mRNA_5585 0.73 +0.1
439,590 + 13953 mRNA_5585 0.74 +0.2
439,714 - 13953 mRNA_5585 0.89 +0.1
439,730 + -0.1
439,738 - -0.8
439,895 + -0.1
439,895 + -0.3
440,058 + +0.5
440,084 - -0.0
440,098 + -0.1
440,129 - +0.3
440,166 - -1.0
440,205 + +0.3
440,208 + -0.5
440,212 - -0.2
440,237 - -1.3
440,238 - +1.8
440,242 - -0.5
440,373 - +1.0
440,374 - -0.3
440,436 - -0.4
440,441 + -0.8
440,451 - -0.1
440,463 - +1.5
440,560 - -0.1
440,566 - -0.0
440,572 - +1.5
440,587 - +0.1
440,591 - -1.0
440,593 - -0.4
440,598 + -1.9
440,750 + +0.3
440,781 - -0.7

Or see this region's nucleotide sequence