Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5589

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13957 and 13958 are separated by 116 nucleotides mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452,647 to 453,380 13957 mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453,497 to 457,057 13958

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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451,810 + -0.1
451,819 - +1.3
451,822 - -0.5
451,976 + +0.7
451,982 - -0.1
452,008 - +1.1
452,118 - -2.0
452,157 + -0.2
452,276 - -2.4
452,276 + +1.4
452,423 - -0.4
452,540 - +1.8
452,596 - -0.9
453,000 + 13957 mRNA_5589 0.48 -0.8
453,034 + 13957 mRNA_5589 0.53 -0.2

Or see this region's nucleotide sequence