Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5590

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13957 and 13958 are separated by 116 nucleotides mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452,647 to 453,380 13957 mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453,497 to 457,057 13958

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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452,540 - +1.8
452,596 - -0.9
453,000 + 13957 mRNA_5589 0.48 -0.8
453,034 + 13957 mRNA_5589 0.53 -0.2
457,260 + -0.3
457,327 + +1.1
457,332 + -1.1
457,442 - -0.3
457,454 - -0.1
457,465 + +0.8
457,468 + -0.1
457,596 + -0.3
457,642 + +1.6
457,706 + -0.9
457,757 - -0.2
457,909 - +0.1
457,998 - -2.1
458,023 + -0.3
458,024 - -0.1
458,051 - -0.4
458,055 - +0.5

Or see this region's nucleotide sequence