Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5591

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13959 and 13960 are separated by 255 nucleotides mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458,129 to 461,343 13959 mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461,599 to 463,064 13960

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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457,260 + -0.3
457,327 + +1.1
457,332 + -1.1
457,442 - -0.3
457,454 - -0.1
457,465 + +0.8
457,468 + -0.1
457,596 + -0.3
457,642 + +1.6
457,706 + -0.9
457,757 - -0.2
457,909 - +0.1
457,998 - -2.1
458,023 + -0.3
458,024 - -0.1
458,051 - -0.4
458,055 - +0.5
458,058 + -1.5
459,071 - 13959 mRNA_5591 0.29 +0.8
459,203 + 13959 mRNA_5591 0.33 -0.8
459,203 + 13959 mRNA_5591 0.33 -0.2
459,226 + 13959 mRNA_5591 0.34 -1.6
459,335 - 13959 mRNA_5591 0.38 +0.3
459,384 + 13959 mRNA_5591 0.39 -0.4
459,390 - 13959 mRNA_5591 0.39 -0.1
459,777 - 13959 mRNA_5591 0.51 -0.8
459,795 + 13959 mRNA_5591 0.52 +0.4
460,080 - 13959 mRNA_5591 0.61 -0.5
460,085 + 13959 mRNA_5591 0.61 -0.0
460,492 - 13959 mRNA_5591 0.73 +0.5
460,521 - 13959 mRNA_5591 0.74 -0.6
460,954 - 13959 mRNA_5591 0.88 +1.1
461,214 - +0.6
461,232 - -0.0
461,497 + -2.2
461,497 + -0.7
461,562 - +0.4
461,686 - -0.7
461,697 - -0.3
461,953 - 13960 mRNA_5592 0.24 -0.0
462,286 - 13960 mRNA_5592 0.47 +0.3
462,330 + 13960 mRNA_5592 0.50 -2.6

Or see this region's nucleotide sequence