Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5660

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14027 and 14028 are separated by 146 nucleotides14028 and 14029 are separated by 529 nucleotides mRNA_5659: 14027 - KOG2422 Uncharacterized conserved protein, at 620,797 to 623,499 14027 mRNA_5660: 14028 - Hypothetical Protein, at 623,646 to 625,624 14028 mRNA_5661: 14029 - K15151 MED10, NUT2 mediator of RNA polymerase II transcription subunit 10, at 626,154 to 626,959 14029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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622,867 + 14027 mRNA_5659 0.77 +0.1
622,957 - 14027 mRNA_5659 0.80 +0.4
623,688 - -0.1
623,699 + +0.2
623,704 + -0.2
623,713 + +0.6
623,722 - -0.4
623,819 - -0.4
624,235 + 14028 mRNA_5660 0.30 -0.2
624,239 - 14028 mRNA_5660 0.30 -1.1
624,358 - 14028 mRNA_5660 0.36 -1.2
624,546 + 14028 mRNA_5660 0.45 -0.9
624,709 - 14028 mRNA_5660 0.54 -1.4
625,550 - +0.6
625,581 - -0.2
625,694 - -0.5
625,710 + -0.2
625,990 + -1.4

Or see this region's nucleotide sequence