Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5692

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14059 and 14060 are separated by 113 nucleotides14060 and 14061 are separated by 343 nucleotides mRNA_5691: 14059 - K05956 RABGGTB geranylgeranyl transferase type-2 subunit beta, at 702,486 to 703,817 14059 mRNA_5692: 14060 - K07342 SEC61G, SSS1, secE protein transport protein SEC61 subunit gamma and related proteins, at 703,931 to 704,550 14060 mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704,894 to 706,050 14061

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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703,879 + +0.2
703,891 + +0.1
704,591 + -1.4
704,730 - +1.3
704,739 + -1.5
705,309 - 14061 mRNA_5693 0.36 -3.2

Or see this region's nucleotide sequence