Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5695

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14062 and 14063 are separated by 624 nucleotides14063 and 14064 are separated by 356 nucleotides mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706,295 to 707,436 14062 mRNA_5695: 14063 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 708,061 to 710,208 14063 mRNA_5696: 14064 - K07152 SCO1_2 protein SCO1/2, at 710,565 to 711,827 14064

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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707,415 + +1.2
707,464 - -1.1
707,560 + -0.6
707,595 - +0.3
707,622 - -0.4
707,724 - +0.1
707,893 - -0.6
707,896 - -1.3
707,927 + -0.1
708,042 - -1.3
708,216 - -1.6
708,266 - -1.6
708,352 + 14063 mRNA_5695 0.14 -0.6
708,991 + 14063 mRNA_5695 0.43 -0.6
709,046 - 14063 mRNA_5695 0.46 -0.7
709,326 + 14063 mRNA_5695 0.59 -0.4
709,452 + 14063 mRNA_5695 0.65 -1.4
709,475 + 14063 mRNA_5695 0.66 -1.8
709,766 + 14063 mRNA_5695 0.79 -2.5
710,123 - -0.7
710,457 - -0.4

Or see this region's nucleotide sequence