Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5700

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14067 and 14068 are separated by 357 nucleotides14068 and 14069 are separated by 103 nucleotides14069 and 14070 are separated by 279 nucleotides mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716,086 to 718,925 14067 mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719,283 to 720,938 14068 mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721,042 to 721,632 14069 mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721,912 to 723,848 14070

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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718,470 - 14067 mRNA_5699 0.84 -0.6
718,523 - 14067 mRNA_5699 0.86 +0.2
718,692 - -1.4
718,943 - +0.3
718,975 - -1.5
718,980 + -0.3
719,018 + -1.3
719,020 - -0.4
719,044 - -0.6
719,050 + -0.2
719,070 + +0.6
719,144 - -0.7
719,177 + -0.2
719,197 + +0.6
719,315 - -0.6
719,359 + +0.1
719,405 - +0.1
719,417 + +0.0
719,437 - -0.6
719,440 - -1.3
719,440 + -0.0
719,450 - 14068 mRNA_5700 0.10 +0.3
719,450 - 14068 mRNA_5700 0.10 +0.1
719,490 + 14068 mRNA_5700 0.12 +0.0
719,492 - 14068 mRNA_5700 0.13 -0.8
719,493 + 14068 mRNA_5700 0.13 -0.0
719,495 - 14068 mRNA_5700 0.13 -0.2
719,509 + 14068 mRNA_5700 0.14 -0.2
719,520 + 14068 mRNA_5700 0.14 +0.5
719,524 + 14068 mRNA_5700 0.15 -0.6
719,531 - 14068 mRNA_5700 0.15 +0.0
719,552 - 14068 mRNA_5700 0.16 +0.4
719,669 - 14068 mRNA_5700 0.23 +0.1
719,679 - 14068 mRNA_5700 0.24 +1.1
720,234 - 14068 mRNA_5700 0.57 -0.6
720,388 - 14068 mRNA_5700 0.67 +0.3
720,681 - 14068 mRNA_5700 0.84 -0.2
720,801 + +0.2
720,940 - +0.3
721,397 + 14069 mRNA_5701 0.60 +0.1
721,548 - 14069 mRNA_5701 0.86 -0.1
721,557 + 14069 mRNA_5701 0.87 -0.1
721,686 + +0.4
721,686 - -0.1
721,689 + -0.2
721,693 + +0.3
721,699 + -0.5
721,704 + +0.1
721,711 + -0.1
721,712 + -0.0
721,714 - -0.2
721,816 - -0.8
721,816 + -0.0
721,818 + -1.4
721,826 - -1.3
721,836 - -1.0
721,836 - +0.4
721,842 + -0.6
721,844 + -0.1
721,856 - -0.2
721,861 + +0.1

Or see this region's nucleotide sequence