Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5708

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14075 and 14076 are separated by 840 nucleotides14076 and 14077 are separated by 638 nucleotides mRNA_5707: 14075 - Hypothetical Protein, at 736,463 to 742,238 14075 mRNA_5708: 14076 - KOG4774 Uncharacterized conserved protein, at 743,079 to 743,817 14076 mRNA_5709: 14077 - K06647 MBP1 transcription factor MBP1, at 744,456 to 746,952 14077

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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742,185 - +0.0
742,271 + +0.5
742,393 + +0.8
742,438 - -2.4
742,556 - -1.1
742,559 + -0.3
742,582 + -2.2
742,602 + -0.3
742,717 + -0.1
742,723 - -1.1
742,744 + -1.6
742,761 - -0.1
742,860 - -0.5
743,926 - +0.2
744,214 + -0.2
744,356 - -0.5

Or see this region's nucleotide sequence