Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5749

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14115 and 14116 are separated by 319 nucleotides14116 and 14117 are separated by 124 nucleotides14117 and 14118 are separated by 268 nucleotides mRNA_5747: 14115 - HMMPfam-F-box-like-PF12937, at 849,321 to 849,879 14115 mRNA_5748: 14116 - K12260 SRX1 sulfiredoxin, at 850,199 to 850,740 14116 mRNA_5749: 14117 - K14863 YTM1, WDR12 ribosome biogenesis protein YTM1, at 850,865 to 852,979 14117 mRNA_5750: 14118 - KOG2306 Uncharacterized conserved protein, at 853,248 to 855,227 14118

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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849,949 - -0.7
849,964 - +0.5
849,969 + -0.4
850,105 + +0.2
850,260 + 14116 mRNA_5748 0.11 +1.0
850,261 - 14116 mRNA_5748 0.11 -0.4
850,263 + 14116 mRNA_5748 0.12 +0.0
850,280 + 14116 mRNA_5748 0.15 -0.2
850,291 - 14116 mRNA_5748 0.17 -0.5
850,558 - 14116 mRNA_5748 0.66 -0.8
850,567 + 14116 mRNA_5748 0.68 -0.8
851,304 + 14117 mRNA_5749 0.21 -0.4
853,064 + +0.6
853,075 + +1.2
853,083 - +0.3
853,100 + +0.2
853,372 - -0.2
853,374 + +0.6
853,384 + +0.2
853,499 + 14118 mRNA_5750 0.13 -0.6
853,826 + 14118 mRNA_5750 0.29 -0.9
853,827 - 14118 mRNA_5750 0.29 -0.5
853,976 - 14118 mRNA_5750 0.37 -0.8

Or see this region's nucleotide sequence