Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5794

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14161 and 14162 are separated by 364 nucleotides14162 and 14163 are separated by 295 nucleotides mRNA_5793: 14161 - K10581 UBE2O ubiquitin-conjugating enzyme E2 O, at 951,477 to 955,108 14161 mRNA_5794: 14162 - K01637 E4.1.3.1, aceA isocitrate lyase, at 955,473 to 957,559 14162 mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394 14163

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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955,083 + +0.8
955,213 + -0.1
955,361 + +0.6
955,365 - -2.1
955,370 + -0.2
955,442 + +0.7
955,505 - -0.6
955,541 - +1.0
955,553 - +0.5
955,693 + 14162 mRNA_5794 0.11 +0.8
955,696 - 14162 mRNA_5794 0.11 -1.1
955,696 + 14162 mRNA_5794 0.11 -0.8
955,830 + 14162 mRNA_5794 0.17 -0.5
956,161 + 14162 mRNA_5794 0.33 +0.1
956,360 + 14162 mRNA_5794 0.43 -0.4
956,477 + 14162 mRNA_5794 0.48 -1.0
956,572 - 14162 mRNA_5794 0.53 -1.0
956,862 + 14162 mRNA_5794 0.67 -2.1
956,899 + 14162 mRNA_5794 0.68 -1.0
957,188 - 14162 mRNA_5794 0.82 -0.6
957,604 + -0.5
957,611 - +0.6
957,653 - -1.1
957,780 - +0.2
957,780 + -1.2
957,781 + -0.4
957,872 + -0.1
957,873 - -0.2
957,913 - +1.3
957,922 + -1.5
958,050 + 14163 mRNA_5795 0.13 -1.3
958,374 + 14163 mRNA_5795 0.34 +0.6
958,534 - 14163 mRNA_5795 0.44 +0.5

Or see this region's nucleotide sequence