Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5856

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14223 and 14224 are separated by 506 nucleotides14224 and 14225 are separated by 117 nucleotides mRNA_5855: 14223 - Hypothetical Protein, at 1,094,294 to 1,098,449 14223 mRNA_5856: 14224 - K03357 APC10, DOC1 anaphase-promoting complex subunit 10, at 1,098,956 to 1,099,820 14224 mRNA_5857: 14225 - K01875 SARS, serS seryl-tRNA synthetase, at 1,099,938 to 1,101,615 14225

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,098,003 + 14223 mRNA_5855 0.89 -1.1
1,098,091 - +0.4
1,098,249 - +0.6
1,098,263 + -1.2
1,098,556 - -1.1
1,098,577 + -0.1
1,098,976 - -0.9
1,098,983 + -1.1
1,099,109 - 14224 mRNA_5856 0.18 -0.2
1,099,123 - 14224 mRNA_5856 0.19 +0.5
1,099,257 - 14224 mRNA_5856 0.35 -1.0
1,099,289 + 14224 mRNA_5856 0.38 -1.0
1,099,409 + 14224 mRNA_5856 0.52 -0.6
1,099,424 + 14224 mRNA_5856 0.54 +0.6
1,099,424 + 14224 mRNA_5856 0.54 -1.0
1,099,713 - 14224 mRNA_5856 0.88 +0.2
1,099,715 - 14224 mRNA_5856 0.88 -0.2
1,099,769 + +0.5
1,099,871 - -0.4
1,099,873 - +1.0

Or see this region's nucleotide sequence