Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5867

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14234 and 14235 are separated by 222 nucleotides14235 and 14236 are separated by 203 nucleotides mRNA_5866: 14234 - KOG1454 Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily), at 1,119,164 to 1,122,161 14234 mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1,122,384 to 1,123,037 14235 mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381 14236

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,121,428 + 14234 mRNA_5866 0.76 -0.9
1,121,445 - 14234 mRNA_5866 0.76 -0.6
1,121,726 + 14234 mRNA_5866 0.85 +1.0
1,121,887 - -0.7
1,122,196 + -0.9
1,122,198 + -0.4
1,122,199 + -1.3
1,122,200 - +0.0
1,122,213 + +0.6
1,122,330 + -0.1
1,122,342 - -0.1
1,122,351 + +0.5
1,123,071 - +0.2
1,123,079 - +0.7
1,123,088 - -0.2
1,123,202 - -1.2
1,123,516 - 14236 mRNA_5868 0.24 -0.0
1,123,541 + 14236 mRNA_5868 0.26 -1.0
1,123,944 - 14236 mRNA_5868 0.62 -0.7
1,123,955 - 14236 mRNA_5868 0.63 +1.3

Or see this region's nucleotide sequence