Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5930

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14298 and 14299 are separated by 146 nucleotides mRNA_5930: 14298 - Hypothetical Protein, at 1,261,131 to 1,261,763 14298 mRNA_5931: 14299 - SUPERFAMILY--SSF51695, at 1,261,910 to 1,263,239 14299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,261,051 - +0.2
1,261,573 - 14298 mRNA_5930 0.70 +0.5
1,261,670 - 14298 mRNA_5930 0.85 -0.1
1,261,802 - +0.2
1,261,878 + +0.4
1,261,982 - +0.1
1,261,986 + +0.3
1,262,175 + 14299 mRNA_5931 0.20 +0.2
1,262,301 - 14299 mRNA_5931 0.29 -1.9
1,262,302 + 14299 mRNA_5931 0.29 +1.6
1,262,714 - 14299 mRNA_5931 0.60 -0.6

Or see this region's nucleotide sequence