Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5950

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14318 and 14319 are separated by 197 nucleotides mRNA_5950: 14318 - KOG2130 Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain, at 1,310,261 to 1,312,291 14318 mRNA_5951: 14319 - HMMPfam-Peptidase of plants and bacteria-PF04450, at 1,312,489 to 1,313,415 14319

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,309,452 + -1.6
1,309,513 + -0.1
1,309,607 + -0.6
1,309,607 + -0.6
1,309,730 + -0.9
1,309,912 - -0.5
1,310,065 - +0.0
1,310,068 + -1.0
1,310,080 + -0.2
1,310,082 - -1.5
1,310,084 + -1.2
1,310,250 + -1.6
1,310,337 - -0.8
1,310,487 + 14318 mRNA_5950 0.11 -0.3
1,310,531 - 14318 mRNA_5950 0.13 -0.9
1,310,796 - 14318 mRNA_5950 0.26 -0.0
1,310,812 + 14318 mRNA_5950 0.27 -0.7
1,310,938 - 14318 mRNA_5950 0.33 +1.6
1,310,961 + 14318 mRNA_5950 0.34 +0.4
1,310,977 + 14318 mRNA_5950 0.35 -0.3
1,311,054 + 14318 mRNA_5950 0.39 +0.6
1,311,077 - 14318 mRNA_5950 0.40 +0.2
1,311,227 - 14318 mRNA_5950 0.48 -0.2
1,311,229 - 14318 mRNA_5950 0.48 -0.1
1,311,236 + 14318 mRNA_5950 0.48 -0.2
1,311,533 + 14318 mRNA_5950 0.63 -1.1
1,311,635 + 14318 mRNA_5950 0.68 +0.3
1,311,829 + 14318 mRNA_5950 0.77 +0.9
1,312,044 - 14318 mRNA_5950 0.88 +0.9
1,312,054 + 14318 mRNA_5950 0.88 -1.3
1,312,113 + -2.6
1,312,130 + +0.8
1,312,401 + +0.8
1,312,429 + -0.6
1,312,434 + -0.3
1,312,615 - 14319 mRNA_5951 0.14 +0.0
1,312,701 - 14319 mRNA_5951 0.23 +0.9
1,312,708 - 14319 mRNA_5951 0.24 -0.3
1,312,729 - 14319 mRNA_5951 0.26 -0.5
1,312,762 + 14319 mRNA_5951 0.29 -0.6
1,312,810 + 14319 mRNA_5951 0.35 +0.3
1,312,852 + 14319 mRNA_5951 0.39 +1.1
1,313,047 - 14319 mRNA_5951 0.60 +0.5
1,313,129 + 14319 mRNA_5951 0.69 +0.2

Or see this region's nucleotide sequence