Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5952

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14319 and 14320 are separated by 351 nucleotides14320 and 14321 are separated by 270 nucleotides mRNA_5951: 14319 - HMMPfam-Peptidase of plants and bacteria-PF04450, at 1,312,489 to 1,313,415 14319 mRNA_5952: 14320 - K15198 BDP1, TFC5 transcription factor TFIIIB component B'', at 1,313,767 to 1,316,568 14320 mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1,316,839 to 1,317,817 14321

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,312,810 + 14319 mRNA_5951 0.35 +0.3
1,312,852 + 14319 mRNA_5951 0.39 +1.1
1,313,047 - 14319 mRNA_5951 0.60 +0.5
1,313,129 + 14319 mRNA_5951 0.69 +0.2
1,313,423 - -0.4
1,313,609 + -0.5
1,313,730 - +0.6
1,316,622 + -1.6
1,316,622 + +2.7
1,316,642 - +1.5
1,316,727 - -0.2
1,316,789 + +0.1
1,316,798 + +1.3
1,316,803 - -1.0
1,317,174 - 14321 mRNA_5953 0.34 -0.4
1,317,245 + 14321 mRNA_5953 0.41 -0.0
1,317,335 + 14321 mRNA_5953 0.51 +0.1
1,317,418 - 14321 mRNA_5953 0.59 +0.0
1,317,528 - 14321 mRNA_5953 0.70 +1.1

Or see this region's nucleotide sequence