Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6146

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14513 and 14514 are separated by 482 nucleotides mRNA_6145: 14513 - HMMPfam-Protein of unknown function (DUF2456)-PF10445, at 115,513 to 116,915 14513 mRNA_6146: 14514 - K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e, at 117,398 to 118,882 14514

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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116,426 + 14513 mRNA_6145 0.65 +0.3
116,535 - 14513 mRNA_6145 0.73 +0.5
116,656 + 14513 mRNA_6145 0.81 +0.2
116,664 - 14513 mRNA_6145 0.82 +0.0
116,699 - 14513 mRNA_6145 0.85 +0.7
116,716 - 14513 mRNA_6145 0.86 -0.5
116,716 + 14513 mRNA_6145 0.86 +0.2
116,755 - 14513 mRNA_6145 0.89 -0.1
116,850 + -0.7
116,865 - -1.6
116,951 + -0.0
117,005 - -1.6
117,017 + +0.1
117,025 - -0.7
117,029 - -0.4
117,036 + -0.9
117,036 + -0.7
117,036 + -0.1
117,036 + +0.1
117,039 + -0.9
117,048 + +0.5
117,132 + -1.4
117,170 - -0.2
117,215 + +0.8
119,273 + +0.2
119,279 + +0.2
119,283 + +0.5
119,425 + +0.5
119,440 - +0.4
119,441 - +0.1
119,448 - -0.7
119,449 - -0.6
119,456 - +0.4
119,462 - +1.0
119,464 + -0.5
119,625 - +0.0

Or see this region's nucleotide sequence