Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6169

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14536 and 14537 are separated by 126 nucleotides14537 and 14538 are separated by 346 nucleotides mRNA_6168: 14536 - SUPERFAMILY--SSF52047, at 160,980 to 164,129 14536 mRNA_6169: 14537 - K20304 TRAPPC6, TRS33 trafficking protein particle complex subunit 6, at 164,256 to 165,475 14537 mRNA_6170: 14538 - KOG3476 Microtubule-associated protein CRIPT, at 165,822 to 166,606 14538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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163,324 + 14536 mRNA_6168 0.74 -0.9
163,593 - 14536 mRNA_6168 0.83 -0.3
163,620 - 14536 mRNA_6168 0.84 -0.2
163,622 + 14536 mRNA_6168 0.84 -0.2
163,742 - 14536 mRNA_6168 0.88 -0.8
163,888 + +0.0
163,907 - +0.4
164,013 + +0.2
164,030 - -0.4
164,176 + -0.3
164,182 - -0.4
164,193 + +0.4
164,213 + +0.2
165,585 + +0.9
165,788 + +0.3
165,893 + -0.1
165,926 + 14538 mRNA_6170 0.13 +0.5
165,936 + 14538 mRNA_6170 0.15 +0.6
166,064 + 14538 mRNA_6170 0.31 -0.3
166,096 + 14538 mRNA_6170 0.35 -0.6
166,207 - 14538 mRNA_6170 0.49 +0.9
166,361 + 14538 mRNA_6170 0.69 -1.2

Or see this region's nucleotide sequence