Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6173

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14540 and 14541 are separated by 369 nucleotides14541 and 14542 are separated by 587 nucleotides mRNA_6172: 14540 - K02685 PRI2 DNA primase large subunit, at 169,850 to 171,909 14540 mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172,279 to 176,176 14541 mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095 14542

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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171,959 - +1.2
171,980 - -0.2
171,984 + +0.1
171,985 + +0.7
171,995 + +0.1
172,005 + -0.3
172,157 + -1.0
172,166 + +0.0
172,237 + +0.2
172,289 + +0.9
172,293 - -0.5
172,426 + -0.8
172,637 - -0.6
172,638 + -0.8
172,714 - 14541 mRNA_6173 0.11 -1.0
172,896 + 14541 mRNA_6173 0.16 +1.4
172,910 + 14541 mRNA_6173 0.16 +0.8
172,995 - 14541 mRNA_6173 0.18 -1.1
173,141 + 14541 mRNA_6173 0.22 -0.1
173,402 - 14541 mRNA_6173 0.29 -1.0
173,409 + 14541 mRNA_6173 0.29 +0.2
173,412 - 14541 mRNA_6173 0.29 +0.1
173,420 + 14541 mRNA_6173 0.29 -2.2
173,501 - 14541 mRNA_6173 0.31 -1.8
173,595 - 14541 mRNA_6173 0.34 +1.3
173,595 - 14541 mRNA_6173 0.34 -1.5
173,611 + 14541 mRNA_6173 0.34 -0.4
173,797 - 14541 mRNA_6173 0.39 +0.2
173,922 + 14541 mRNA_6173 0.42 -0.3
174,285 - 14541 mRNA_6173 0.51 +0.2
174,463 - 14541 mRNA_6173 0.56 -0.7
174,528 + 14541 mRNA_6173 0.58 -0.5
174,766 - 14541 mRNA_6173 0.64 +0.5
174,835 - 14541 mRNA_6173 0.66 -0.0
175,211 - 14541 mRNA_6173 0.75 -0.3
175,217 + 14541 mRNA_6173 0.75 +0.4
175,238 - 14541 mRNA_6173 0.76 +0.2
175,312 - 14541 mRNA_6173 0.78 +0.6
175,325 - 14541 mRNA_6173 0.78 -0.0
175,346 + 14541 mRNA_6173 0.79 -1.2
175,364 - 14541 mRNA_6173 0.79 +1.0
175,365 - 14541 mRNA_6173 0.79 +0.1
175,483 + 14541 mRNA_6173 0.82 -0.7
175,752 - 14541 mRNA_6173 0.89 +0.1
175,805 + -1.9
175,870 + -0.2
175,941 + -0.4
175,958 - -0.7
176,086 + -0.9
176,107 + +0.2
176,243 + +0.0
176,244 - -1.5
176,249 + +0.4
176,253 - -0.6
176,267 + +1.0
176,448 + +0.0
176,541 - +0.6
176,545 - -0.2
176,553 - -1.4
176,560 + -0.7
176,561 + +1.0
176,563 + -0.1
176,641 - -0.4
176,642 + +0.6
176,645 - -0.8
176,768 - -0.4
176,780 + -1.3
176,932 - 14542 mRNA_6174 0.13 -0.4
176,938 + 14542 mRNA_6174 0.13 -0.6
176,938 + 14542 mRNA_6174 0.13 -0.8
177,065 - 14542 mRNA_6174 0.23 +0.9

Or see this region's nucleotide sequence