Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6253

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14621 and 14622 are separated by 401 nucleotides mRNA_6253: 14621 - HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 360,247 to 361,370 14621 mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361,772 to 365,441 14622

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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359,280 + -0.2
359,321 + -0.3
359,321 + -0.2
359,436 + -0.1
359,550 - -0.4
359,692 + -0.8
359,692 - +0.3
359,866 - -0.3
359,892 + +0.8
359,964 + -1.2
360,019 - +0.4
360,032 - +0.6
360,291 + +1.7
360,442 - 14621 mRNA_6253 0.17 -0.2
360,549 + 14621 mRNA_6253 0.27 -1.7
360,556 + 14621 mRNA_6253 0.27 -0.9
360,611 + 14621 mRNA_6253 0.32 +0.7
361,459 - +0.2
361,467 + -0.2
361,475 + -0.4
361,606 - +0.3
361,606 - -0.0
361,647 + +1.2
361,753 - -0.1
361,896 + -1.6
362,056 + +0.2
362,188 + 14622 mRNA_6254 0.11 -0.1
362,343 - 14622 mRNA_6254 0.16 -1.2
362,344 + 14622 mRNA_6254 0.16 -0.2

Or see this region's nucleotide sequence