Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6273

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14640 and 14641 are separated by 572 nucleotides mRNA_6272: 14640 - KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast), at 413,693 to 414,563 14640 mRNA_6273: 14641 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 415,136 to 416,506 14641

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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414,171 + 14640 mRNA_6272 0.55 -0.1
414,641 - -0.9
414,769 + -0.6
414,828 - -0.7
414,902 - +0.1
414,905 - +0.6
416,651 - +0.3
416,797 - -0.7
416,818 + -0.9
416,823 - +0.1
416,948 + -0.8
416,964 - -0.1
416,965 - +0.7
416,969 - +0.8
416,977 + -0.3
417,105 + -2.2
417,110 - +0.0
417,128 + -0.2
417,260 + +1.3

Or see this region's nucleotide sequence