Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6348

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14715 and 14716 are separated by 78 nucleotides14716 and 14717 are separated by 143 nucleotides mRNA_6347: 14715 - Hypothetical Protein, at 601,204 to 601,756 14715 mRNA_6348: 14716 - K11373 ELP1, IKI3, IKBKAP elongator complex protein 1, at 601,835 to 607,122 14716 mRNA_6349: 14717 - BLAST NADH dehydrogenase [ubiquinone] 1 beta subcomplex..., at 607,266 to 607,793 14717

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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601,040 + +0.2
601,193 + +0.5
601,341 + 14715 mRNA_6347 0.25 +1.0
601,464 - 14715 mRNA_6347 0.47 +2.2
601,481 + 14715 mRNA_6347 0.50 +1.0
601,487 - 14715 mRNA_6347 0.51 +0.7
601,649 - 14715 mRNA_6347 0.80 -0.8
601,747 - +0.2
601,761 - -0.3
601,801 + +0.2
601,938 - -1.0
602,339 - +0.9
602,816 - 14716 mRNA_6348 0.19 -0.7
603,086 - 14716 mRNA_6348 0.24 -1.1
603,255 + 14716 mRNA_6348 0.27 +0.8
603,280 - 14716 mRNA_6348 0.27 +0.2
603,764 - 14716 mRNA_6348 0.36 +0.8
604,172 + 14716 mRNA_6348 0.44 +0.1
604,399 + 14716 mRNA_6348 0.48 -1.1
604,885 + 14716 mRNA_6348 0.58 -1.0
605,182 - 14716 mRNA_6348 0.63 +1.0
605,636 - 14716 mRNA_6348 0.72 -2.6
606,052 - 14716 mRNA_6348 0.80 +0.6
606,922 + -0.1
607,072 - -1.2
607,107 + +0.1
607,197 + -1.2
607,202 - +1.7
607,223 - -0.6
608,075 - +0.2
608,086 - -1.1
608,122 + +0.1

Or see this region's nucleotide sequence