Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6354

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14721 and 14722 are separated by 234 nucleotides14722 and 14723 are separated by 529 nucleotides mRNA_6353: 14721 - KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, at 616,039 to 616,629 14721 mRNA_6354: 14722 - BLAST Mei2p [Pneumocystis carinii], at 616,864 to 619,118 14722 mRNA_6355: 14723 - KOG4532 WD40-like repeat containing protein, at 619,648 to 622,272 14723

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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615,979 - -0.2
616,062 - +0.5
616,539 - 14721 mRNA_6353 0.85 -0.9
616,540 - 14721 mRNA_6353 0.85 +1.4
616,547 + 14721 mRNA_6353 0.86 -1.6
616,703 + +0.3
616,713 + -1.3
616,725 - +0.7
617,408 - 14722 mRNA_6354 0.24 +1.8
617,423 - 14722 mRNA_6354 0.25 -1.0
617,431 + 14722 mRNA_6354 0.25 -0.0
617,545 - 14722 mRNA_6354 0.30 +0.3
617,567 + 14722 mRNA_6354 0.31 -1.3
617,726 + 14722 mRNA_6354 0.38 +0.6
617,726 - 14722 mRNA_6354 0.38 -0.1
618,471 + 14722 mRNA_6354 0.71 -0.7
618,640 + 14722 mRNA_6354 0.79 +0.2
619,506 - +0.2
619,815 + +0.4
619,978 + 14723 mRNA_6355 0.13 -1.5
619,979 - 14723 mRNA_6355 0.13 +0.3
620,112 + 14723 mRNA_6355 0.18 +0.2
620,116 - 14723 mRNA_6355 0.18 -0.3

Or see this region's nucleotide sequence