Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6363

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14730 and 14731 are separated by 66 nucleotides14731 and 14732 overlap by 61 nucleotides mRNA_6362: 14730 - SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 638,595 to 641,031 14730 mRNA_6363: 14731 - K14553 UTP18 U3 small nucleolar RNA-associated protein 18, at 641,098 to 643,745 14731 mRNA_6364: 14732 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 643,685 to 645,198 14732

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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640,205 - 14730 mRNA_6362 0.66 -0.6
640,351 - 14730 mRNA_6362 0.72 -0.5
640,479 + 14730 mRNA_6362 0.77 +0.1
640,515 - 14730 mRNA_6362 0.79 -0.6
640,520 + 14730 mRNA_6362 0.79 +0.5
640,694 - 14730 mRNA_6362 0.86 -0.6
640,971 + -0.5
643,426 + 14731 mRNA_6363 0.88 -0.3
643,428 + 14731 mRNA_6363 0.88 -0.7
643,448 - 14731 mRNA_6363 0.89 -0.2
644,012 - 14732 mRNA_6364 0.22 -1.2
644,412 - 14732 mRNA_6364 0.48 +0.1
644,571 - 14732 mRNA_6364 0.59 +0.0

Or see this region's nucleotide sequence