Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6386

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14753 and 14754 are separated by 540 nucleotides14754 and 14755 are separated by 399 nucleotides mRNA_6385: 14753 - K03107 SRP68 signal recognition particle subunit SRP68, at 687,746 to 690,070 14753 mRNA_6386: 14754 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 690,611 to 691,768 14754 mRNA_6387: 14755 - Hypothetical Protein, at 692,168 to 693,043 14755

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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689,813 - 14753 mRNA_6385 0.89 -0.8
690,117 - +0.2
690,117 - -1.5
690,117 - -0.0
690,117 - +0.3
690,125 + +0.3
690,128 - -0.1
690,130 - -0.2
690,161 + -0.3
690,418 - +1.1
690,419 - +0.3
690,439 + +0.7
690,493 + -1.2
690,853 + 14754 mRNA_6386 0.21 -1.1
690,861 + 14754 mRNA_6386 0.22 -1.4
691,237 - 14754 mRNA_6386 0.54 +0.7
691,448 - 14754 mRNA_6386 0.72 -0.7
691,592 + 14754 mRNA_6386 0.85 -1.4
692,023 + +0.3
692,279 - 14755 mRNA_6387 0.13 -0.2

Or see this region's nucleotide sequence