Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6407

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14774 and 14775 are separated by 181 nucleotides14775 and 14776 are separated by 111 nucleotides mRNA_6406: 14774 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 736,897 to 739,297 14774 mRNA_6407: 14775 - HMMPfam-Protein of unknown function (DUF952)-PF06108,SUPERFAMILY--SSF56399, at 739,479 to 740,196 14775 mRNA_6408: 14776 - K19308 BMT6 25S rRNA (uracil2843-N3)-methyltransferase, at 740,308 to 741,629 14776

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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738,884 + 14774 mRNA_6406 0.83 -0.4
739,231 + +1.4
739,509 + -0.5
739,858 - 14775 mRNA_6407 0.53 -1.0
739,922 + 14775 mRNA_6407 0.62 -0.2
740,097 + 14775 mRNA_6407 0.86 -0.1
740,109 + 14775 mRNA_6407 0.88 +0.2
740,118 + 14775 mRNA_6407 0.89 -0.6
740,245 + -0.1
740,256 + -1.2
740,536 + 14776 mRNA_6408 0.17 +0.5
740,658 + 14776 mRNA_6408 0.26 +0.6
740,682 + 14776 mRNA_6408 0.28 -0.3
740,829 - 14776 mRNA_6408 0.39 -0.6
741,116 + 14776 mRNA_6408 0.61 -0.8
741,148 + 14776 mRNA_6408 0.64 -0.0

Or see this region's nucleotide sequence