Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6454

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14821 and 14822 are separated by 692 nucleotides14822 and 14823 are separated by 159 nucleotides mRNA_6453: 14821 - K03801 lipB lipoyl(octanoyl) transferase, at 827,236 to 828,223 14821 mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828,916 to 829,758 14822 mRNA_6455: 14823 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 829,918 to 832,599 14823

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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828,319 - +1.0
828,338 + +0.4
828,397 - -0.7
828,447 - +0.1
828,449 - -0.1
828,464 + -2.1
828,473 + -0.3
828,474 - +0.8
828,492 + -0.3
828,618 - -0.5
828,627 + -0.7
828,630 - -1.9
828,632 + +0.2
828,654 + +0.3
828,702 + -0.9
828,703 + +0.0
828,769 - -0.7
828,772 - -0.2
828,776 + -0.3
828,778 + -2.4
828,834 - -0.5
828,839 + +1.5
828,841 - -1.6
828,849 + +0.4
828,857 + +0.7
828,861 + +0.3
828,864 + -0.3
828,994 + +0.8
828,994 + -0.3
828,995 - +0.3
829,594 + 14822 mRNA_6454 0.80 +0.5
829,721 - -0.3
829,722 + -0.4
829,987 - +0.6
830,183 - -2.1

Or see this region's nucleotide sequence