Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6480

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14847 and 14848 are separated by 505 nucleotides14848 and 14849 are separated by 320 nucleotides mRNA_6479: 14847 - K07378 NLGN neuroligin, at 888,957 to 890,595 14847 mRNA_6480: 14848 - Hypothetical Protein, at 891,101 to 891,716 14848 mRNA_6481: 14849 - K02201 E2.7.7.3B pantetheine-phosphate adenylyltransferase, at 892,037 to 893,331 14849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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890,169 - 14847 mRNA_6479 0.74 +1.0
890,180 - 14847 mRNA_6479 0.75 -0.2
890,209 + 14847 mRNA_6479 0.76 -0.7
890,330 - 14847 mRNA_6479 0.84 -0.8
890,337 + 14847 mRNA_6479 0.84 -1.1
890,340 + 14847 mRNA_6479 0.84 +0.1
890,479 + -0.2
890,490 - +0.3
890,623 - +0.4
890,623 - -0.5
890,630 - -0.5
890,633 - -0.0
890,649 + -3.0
890,656 + -0.7
890,763 + +0.0
890,784 + -1.4
890,786 + +0.3
890,935 + +0.3
890,951 + -1.1
891,074 + -0.6
891,083 - +0.6
891,366 - 14848 mRNA_6480 0.43 -0.4
891,935 + +1.6
891,939 - +0.7
891,951 - -0.2
891,956 - -0.6
891,976 - +0.3
891,997 + -1.0

Or see this region's nucleotide sequence