Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6526

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14893 and 14894 are separated by 965 nucleotides14894 and 14895 are separated by 214 nucleotides14895 and 14896 are separated by 198 nucleotides mRNA_6525: 14893 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,002,265 to 1,003,923 14893 mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1,004,889 to 1,006,380 14894 mRNA_6527: 14895 - K18178 COA5, PET191 cytochrome c oxidase assembly factor 5, at 1,006,595 to 1,007,064 14895 mRNA_6528: 14896 - K01514 PRUNE, PPX1 exopolyphosphatase, at 1,007,263 to 1,008,621 14896

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,004,076 - +1.2
1,004,497 + -0.7
1,004,830 - -0.2
1,004,841 - -1.6
1,004,861 - +0.2
1,006,424 - +0.4
1,006,427 + -1.9
1,006,432 + -0.7
1,006,610 + +1.4
1,007,067 - -4.0

Or see this region's nucleotide sequence