Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6610

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14977 and 14978 are separated by 194 nucleotides14978 and 14979 are separated by 330 nucleotides mRNA_6609: 14977 - KOG1232 Proteins containing the FAD binding domain, at 1,236,785 to 1,239,365 14977 mRNA_6610: 14978 - BLAST related to MSL5-branch point bridging protein [Sporis..., at 1,239,560 to 1,240,604 14978 mRNA_6611: 14979 - K03849 ALG8 alpha-1,3-glucosyltransferase, at 1,240,935 to 1,243,204 14979

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,238,580 + 14977 mRNA_6609 0.70 +0.8
1,238,650 + 14977 mRNA_6609 0.72 +0.8
1,239,011 + 14977 mRNA_6609 0.86 -3.0
1,239,297 + -0.1
1,239,298 - -1.3
1,239,299 + -0.9
1,239,329 + +0.2
1,239,744 - 14978 mRNA_6610 0.18 -0.0
1,239,903 + 14978 mRNA_6610 0.33 -0.5
1,240,459 - 14978 mRNA_6610 0.86 +2.1
1,240,771 - +0.0
1,240,880 - -0.2
1,240,891 + -0.9
1,240,900 + +1.4
1,240,919 + -1.1
1,241,061 + +0.4
1,241,067 - +0.1
1,241,176 + 14979 mRNA_6611 0.11 +0.1
1,241,233 - 14979 mRNA_6611 0.13 +0.6
1,241,336 + 14979 mRNA_6611 0.18 -0.4
1,241,385 + 14979 mRNA_6611 0.20 +0.1
1,241,421 + 14979 mRNA_6611 0.21 +0.1

Or see this region's nucleotide sequence