Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6622

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14989 and 14990 are separated by 857 nucleotides14990 and 14991 are separated by 467 nucleotides mRNA_6621: 14989 - Hypothetical Protein, at 1,268,421 to 1,270,121 14989 mRNA_6622: 14990 - Hypothetical Protein, at 1,270,979 to 1,271,740 14990 mRNA_6623: 14991 - Hypothetical Protein, at 1,272,208 to 1,273,680 14991

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,270,023 - +0.5
1,270,233 - -0.1
1,271,256 - 14990 mRNA_6622 0.36 +0.9
1,271,488 + 14990 mRNA_6622 0.67 -0.1
1,271,634 + 14990 mRNA_6622 0.86 +0.0
1,271,790 + -0.1
1,271,906 - -0.3
1,271,915 + +0.1
1,271,965 + +0.8
1,271,970 - -0.6
1,272,047 - -1.1
1,272,065 + -0.5
1,272,083 - +0.0
1,272,236 + +0.9
1,272,449 - 14991 mRNA_6623 0.16 -1.5
1,272,526 - 14991 mRNA_6623 0.22 +1.7
1,272,526 - 14991 mRNA_6623 0.22 -0.5
1,272,535 - 14991 mRNA_6623 0.22 +0.6
1,272,697 - 14991 mRNA_6623 0.33 +0.1

Or see this region's nucleotide sequence