Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6637

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15004 and 15005 are separated by 210 nucleotides15005 and 15006 are separated by 223 nucleotides mRNA_6636: 15004 - K14403 CPSF3, YSH1 cleavage and polyadenylation specificity factor subunit 3, at 1,305,979 to 1,309,273 15004 mRNA_6637: 15005 - K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3, at 1,309,484 to 1,313,910 15005 mRNA_6638: 15006 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,314,134 to 1,316,580 15006

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,313,897 + -1.0
1,314,176 - -0.9
1,314,177 - -0.1
1,314,259 - -0.4
1,314,446 + 15006 mRNA_6638 0.13 -0.1

Or see this region's nucleotide sequence